Payments Setup (Admin)
How to enable payments, manage options, and configure financial operations in ClinicOS.
Written By Brendan Baker
Last updated About 3 hours ago
Payments requires an administrator to connect and manage the clinic’s payment provider.
This article covers how to set it up correctly, safely, and in compliance with your internal policies.
1. Connect Your Payment Provider
Where to Go
Admin → Payment Settings
Steps
Select your payment provider.
Log in using the provider’s account credentials.
Confirm that your business information matches provider records.
Authorize ClinicOS to process payments on your behalf.
Save changes.
Once connected:
Credit/debit
ACH (if supported)
Digital wallets
become available immediately.
2. Configure Accepted Payment Methods
In Payment Settings, toggle which options your clinic supports:
Card
Cash
ACH
Digital wallet
Split payments
Partial payments
These settings determine what your team sees inside the Payments overlay.
3. Set Deposit & Partial Payment Rules
Configure:
Minimum deposit amounts
Required deposits for surgeries
Pre-visit holds
Refund windows
Whether partial payments can be used for open invoices
ClinicOS will follow your rules across all workflows.
4. Enable MyPet Payments (If activated or in your package for Your Clinic)
If MyPet Payments is live for your account:
You can enable:
Client-side invoice payment
Remote approvals
Digital signatures
Stored payment methods
Pre-visit deposits
Post-visit settlement
To activate:
Go to Admin → Payment Settings → MyPet Payments
Toggle it ON
Review your clinic’s consent, messaging, and invoice-sharing preferences
Save
MyPet interacts directly with Payments & Reconciliation — no extra portals needed.
5. Review & Configure Taxes
Go to:
Admin → Pricing & Taxes
Set:
Standard tax rates
Tax-exempt items
Service vs. product tax rules
Use tax (where applicable)
These rates are applied automatically in Payments.
6. Review Pricing Integration
Pricing in Payments comes directly from:
Services
Inventory
CarePlans
CarePlan+ flows
Admins should confirm:
No duplicate price entries
No hidden bundles
No outdated codes
Surgery packages match current protocols
7. Enable/Monitor Payment Reconciliation
PawthosX Business Presence & Payment Reconciliation is where your financial data syncs, including:
Completed payments
Refunds
Voids
Failed transactions
Partial payments
Deposits
Daily summaries
Discrepancies
Processor messages
Admins should review this dashboard daily to ensure financial accuracy.
8. User Permissions
Under Admin → Roles & Permissions, configure:
Staff roles allowed to:
Collect payments
Apply partial or split payments
Process refunds
View payment history
Edit paid invoices
Access reconciliation
Access Payment Settings (Admins only)
Staff see only what their role allows.
9. Terminal / Hardware Settings (If Used)
If your connected processor uses terminals or card readers:
You can configure:
Terminal pairing
Tap-to-pay settings
Default tip options (if clinic uses them)
Local network syncing
Not all clinics use hardware — MyPet and browser-based checkout reduce the need.
10. Final Checklist Before Going Live
☐ Processor connected
☐ Payment methods enabled
☐ Taxes configured
☐ Price list verified
☐ Roles & permissions set
☐ Reconciliation dashboard reviewed
☐ Deposit/refund rules set
☐ MyPet payments (if enabled) configured
Once this checklist is complete, Payments is ready for full use across ClinicOS.
11. PAX Android Terminal Setup & Offline Processing
PAX Android terminals are the recommended hardware devices for ClinicOS. They give clinics a reliable, modern checkout option without tying payment success to internet uptime.
These devices connect directly to your payment processor and integrate with Payments inside ClinicOS.
What PAX Terminals Can Do
1. Secure, Standalone Processing
PAX terminals operate as dedicated payment hardware — fully isolated from the clinic’s workstations.
This reduces local device dependencies and increases checkout stability.
2. Offline Mode for Interrupted Internet
If your clinic temporarily loses internet, PAX terminals can continue accepting card transactions up to a preset offline limit (configurable per clinic through your processor).
Transactions are securely stored on the device
When the connection returns, the terminal automatically processes the queued payments
Staff are not blocked during outages
This ensures that even during:
storms
ISP outages
router failures
…your clinic can continue seeing patients and checking clients out without disruption.
3. Security in Offline Mode
Even when offline:
Card data is encrypted
Nothing is stored in readable form
Offline payments follow the rules set by your processor (amount limits, card-type restrictions, risk controls)
ClinicOS never stores card data.
4. Automatic Syncing
When internet connectivity returns:
The terminal reconnects
Offline transactions begin processing automatically
Payment confirmations appear in ClinicOS after settlement
Any failures surface in Business Presence & Payment Reconciliation for review
No manual re-entry. No double charging.
How to Enable PAX Terminals
Setup Steps
Go to Admin → Payment Settings → Terminals
Select Add Terminal
Power on the PAX device and connect it to WiFi or Ethernet
Enter the pairing code displayed on the terminal
Confirm device name and location (exam room, front desk, pharmacy, etc.)
Save
Your clinic may assign:
default terminal per workstation
shared terminal pools
mobile terminals for curbside or room-side checkout
Operational Benefits
Zero downtime checkout — continue processing even during internet outages
No bottleneck at the front desk — use multiple terminals or mobile terminals
Stable, predictable workflow — terminals stay connected even when browsers refresh
Fewer failed transactions — terminals handle heavy lifting so workstations don’t